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Before running deconvolution, filter out low-quality data using the spacexr Preprocessing Function to establish robust gene cutoffs: rctd 404 top

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A common challenge when retrieving data or configuring fine-grained matrices is the emergence of missing cell assignments ( NA values) or errors when pulling from public repositories like Broad Institute's Single Cell Portal.

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: It deconvolves the spatial pixels to calculate the exact proportion of each cell type present at that specific coordinate.